Lecture and Exercise Protein Prediction II for Bioinformaticians WS18/19
Type: |
Lecture (4 SWS) + Exercise (2 SWS) |
---|---|
Ects: |
8.0 |
Lecturer |
Burkhard Rost (lecture)
Christian Dallago (exercise) |
Rotation: |
Tuesday, 12:30 - 14:00 (lecture) |
Place: |
Lecture: 01.09.034 Exercise: 01.09.034 Exam: 019, LMU Physics building at the other end of the Garching campus |
Language: |
English |
Announcements: |
Lecture on Tuesday 10.12.19 cancelled due to illness! The exercise will be in room 01.09.034 (Informatics building) from 12:00 to 13:00. The latest news are always on top! |
Exam: |
Thursday, January 30, 2020. 11:00 - 13:00, room 019 |
This lecture continues the 'Protein Prediction' lecture. The attendance of this lecture is however not a mandatory requrement for 'Protein Prediction II'.Topics will include (but not be limited to):
Group |
Topic for group project |
Topic and date for intermediate presentation |
Final Talk |
---|---|---|---|
1 | Signal Peptides | Data set (Nov 28) | Jan 23 |
2 | NLS / NES | Biological background (Nov 14) | Jan 16 |
10 | Binding Residues | Biological background (Nov 14) | Jan 16 |
11 | Signal Peptides | State-of-the-art (Nov 28) | Jan 23 |
12 | NLS / NES | Data set (Nov 28) | Jan 16 |
13 | Signal Peptides | Biological background (Nov 14) | Jan 23 |
14 | Binding Residues | State-of-the-art (Nov 28) | Jan 16 |
Data sets & ELMo embeddings:
- Binding site residues, br_seqvec.tar.gz (462MB)
- Signal peptides, sp_seqvec.tar.gz (5.5GB)
- NES/NLS, ns_seqvec.tar.gz (2.0GB)
Intermediate Student Presentations:
- Biological Background:
- State of the Art:
- Data Set: NES/NLS Signal Peptides