SNPdbe statistics (updated 2012/03/05)

Total counts:

Organisms:2985
Protein sequences:159142
SAASs:1691464

Top ten organisms:

OrganismSAASsSequences
Homo sapiens (human)967879 (57%)31979 (20%)
Mus musculus (house mouse)210047 (12%)23796 (15%)
Oryza sativa (rice)188848 (11%)17040 (11%)
Bos taurus (cattle)64057 (4%)8241 (5%)
Rattus norvegicus (Norway rat)40245 (2%)10326 (6%)
Canis lupus familiaris (dog)22285 (1%)11693 (7%)
Danio rerio (zebrafish)16586 (1%)6181 (4%)
Escherichia coli K-12 (None)15604 (1%)1339 (1%)
Gallus gallus (chicken)13854 (1%)5511 (3%)
Pan troglodytes (chimpanzee)11811 (1%)8799 (6%)

Predicted functional effect:

EffectNo effectNo prediction
SNAP:781543 (46%)895093 (53%)14828 (1%)
SIFT:578864 (34%)1029746 (61%)82854 (5%)

Human variants:

Overall:967879 (100%)
Observed functional effect:23121 (2%)
Disease associations:26842 (3%)
Observed functional effect and disease:1629 (0%)

Contributions of underlying data sources:

SwissProt:

Overall SAASs:220851 (100%)
Functional effect:23121 (17%)
Disease associations:26842 (12%)
SAAS type:VARIANT: 80006 (36%); MUTAGEN: 38245 (17%); CONFLICT: 102600 (46%)
SAASs with functional or
structural features :
47043 (21%)

PMD:

Overall SAASs:87,439 (100%)
Functional effect:72,738 (83%)
Structural effect:7,933 (9%)
Disease associations:6,768 (8%)



Underlying database builts

SwissProt:2012_01
dbSNP:
Norway rat (taxid 10116): b130
dog (taxid 9615): b126
Rhesus monkey (taxid 9544): b128
rice (taxid 4530): b128
gray short-tailed opossum (taxid 13616): b128
cattle (taxid 9913): b131
platypus (taxid 9258): b130
hybrid cattle (taxid 30522): b128
honey bee (taxid 7460): b128
chimpanzee (taxid 9598): b127
house mouse (taxid 10090): b131
human (taxid 9606): b135
chicken (taxid 9031): b128
zebrafish (taxid 7955): b130
1000 Genomes:Release May 21 2011
PMD (unmaintained):March 2007