SNPdbe statistics (updated 2012/03/05)
Total counts:
Organisms: | 2985 |
Protein sequences: | 159142 |
SAASs: | 1691464 |
Top ten organisms:
Organism | SAASs | Sequences |
Homo sapiens (human) | 967879 (57%) | 31979 (20%) |
Mus musculus (house mouse) | 210047 (12%) | 23796 (15%) |
Oryza sativa (rice) | 188848 (11%) | 17040 (11%) |
Bos taurus (cattle) | 64057 (4%) | 8241 (5%) |
Rattus norvegicus (Norway rat) | 40245 (2%) | 10326 (6%) |
Canis lupus familiaris (dog) | 22285 (1%) | 11693 (7%) |
Danio rerio (zebrafish) | 16586 (1%) | 6181 (4%) |
Escherichia coli K-12 (None) | 15604 (1%) | 1339 (1%) |
Gallus gallus (chicken) | 13854 (1%) | 5511 (3%) |
Pan troglodytes (chimpanzee) | 11811 (1%) | 8799 (6%) |
Predicted functional effect:
Effect | No effect | No prediction | |
SNAP: | 781543 (46%) | 895093 (53%) | 14828 (1%) |
SIFT: | 578864 (34%) | 1029746 (61%) | 82854 (5%) |
Human variants:
Overall: | 967879 (100%) |
Observed functional effect: | 23121 (2%) |
Disease associations: | 26842 (3%) |
Observed functional effect and disease: | 1629 (0%) |
Contributions of underlying data sources:
SwissProt:
Overall SAASs: | 220851 (100%) |
Functional effect: | 23121 (17%) |
Disease associations: | 26842 (12%) |
SAAS type: | VARIANT: 80006 (36%); MUTAGEN: 38245 (17%); CONFLICT: 102600 (46%) |
SAASs with functional or structural features : | 47043 (21%) |
PMD:
Overall SAASs: | 87,439 (100%) |
Functional effect: | 72,738 (83%) |
Structural effect: | 7,933 (9%) |
Disease associations: | 6,768 (8%) |
Underlying database builts
SwissProt: | 2012_01 |
dbSNP: | |
Norway rat (taxid 10116): b130 | |
dog (taxid 9615): b126 | |
Rhesus monkey (taxid 9544): b128 | |
rice (taxid 4530): b128 | |
gray short-tailed opossum (taxid 13616): b128 | |
cattle (taxid 9913): b131 | |
platypus (taxid 9258): b130 | |
hybrid cattle (taxid 30522): b128 | |
honey bee (taxid 7460): b128 | |
chimpanzee (taxid 9598): b127 | |
house mouse (taxid 10090): b131 | |
human (taxid 9606): b135 | |
chicken (taxid 9031): b128 | |
zebrafish (taxid 7955): b130 | |
1000 Genomes: | Release May 21 2011 |
PMD (unmaintained): | March 2007 |