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Service for sequence analysis and Protein structure Prediction |
See the official Rostlab GitHub page for the latest updates and tools. Some tools listed below may be deprecated or discontinued.
Aquaria | Identify relevant exerimental 3D structures and generate insight from structures and annotations |
Fold recognition without folds: Improved and generalized method for sequence-profile and profile-profile comparisons using sequence and predicted 1D structure |
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CHOPping proteins into structural domain-like fragments |
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Consensus Sequence Searches with PSI-BLAST |
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Continuous assignment of Protein Secondary Structure |
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Protein disorder prediction based on orthogonal sources of information |
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Prediction of NOn-Regular Secondary Structure (NORS) |
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Prediction of protein flexibility and rigidity prediction from sequence |
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Prediction of inter-residue contacts |
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Prediction of TransMembrane Beta Barrels |
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Evaluate new methods for Trans-Membrane Helix prediction |
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Prediction of natively unstructured regions through contact maps |
Prediction of Enzymatic Activity of a Protein Sequence in Terms of Enzyme Commission (EC) Numbers |
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Prediction of residues involved in DNA binding |
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Prediction of residues involved in external protein-protein interactions. |
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De novo prediction of protein sub-cellular localization |
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Prediction of sub-cellular LOCalization for structural genomics targets |
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Prediction of sub-cellular localization for all proteins in all domains of life |
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Method for assessing the validity of yeast two hybrid experiments results |
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Prediction and analysis of Nuclear Localization Signals |
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Evaluates the effects of single amino acid substitutions on protein function |
Creating sequence-Unique Protein databases |
Mining Natural Language text for PROTein names and their UniProt-IDs |
Database collecting and annotating proteins involved in cell-cycle control |
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Database of structure-inferred antigenic epitopes. |
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Archive of proteins from endoplasmic reticulum and Golgi apparatus |
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LocDB is a expert curated database that collects experimental annotations for the subcellular localization of proteins in Human (Homo sapiens) and Weed (Arabidopsis thaliana) |
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Database of nuclear localization signals (NLSs) and of nuclear proteins targeted to the nucleus by NLS motifs |
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NMP-db is a database of nuclear matrix associated proteins |
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SNPdbe is a rich database of nsSNPs augmented with effects (experimentally derived and predicted), disease associations and more |
Evaluation of transmembrane helix prediction methods: dataset and evalutation scores |
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Predicted molecular effects tell stories about system level of disease |