Publications

Found 18 results
Filters: Keyword is Computer Simulation  [Clear All Filters]
2014
Feiglin A, Ashkenazi S, Schlessinger A, Rost B, Ofran Y. Co-expression and co-localization of hub proteins and their partners are encoded in protein sequence. Mol Biosyst. 2014 ;10(4):787-94.
2009
Bromberg Y, Overton J, Vaisse C, Leibel RL, Rost B. In silico mutagenesis: a case study of the melanocortin 4 receptor. FASEB J. 2009 ;23(9):3059-69.
Bigelow H, Rost B. Online tools for predicting integral membrane proteins. Methods Mol Biol. 2009 ;528:3-23.
Kernytsky A, Rost B. Using genetic algorithms to select most predictive protein features. Proteins. 2009 ;75(1):75-88.
2008
Bromberg Y, Rost B. Comprehensive in silico mutagenesis highlights functionally important residues in proteins. Bioinformatics. 2008 ;24(16):i207-12.
Lippi M, Passerini A, Punta M, Rost B, Frasconi P. MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence. Bioinformatics. 2008 ;24(18):2094-5.
2007
Ofran Y, Rost B. ISIS: interaction sites identified from sequence. Bioinformatics. 2007 ;23(2):e13-6.
Schlessinger A, Liu J, Rost B. Natively unstructured loops differ from other loops. PLoS Comput Biol. 2007 ;3(7):e140.
Schlessinger A, Punta M, Rost B. Natively unstructured regions in proteins identified from contact predictions. Bioinformatics. 2007 ;23(18):2376-84.
Ofran Y, Mysore V, Rost B. Prediction of DNA-binding residues from sequence. Bioinformatics. 2007 ;23(13):i347-53.
2006
Ofran Y, Yachdav G, Mozes E, Soong T-T, Nair R, Rost B. Create and assess protein networks through molecular characteristics of individual proteins. Bioinformatics. 2006 ;22(14):e402-7.
2005
Graña O, Baker D, MacCallum RM, Meiler J, Punta M, Rost B, Tress ML, Valencia A. CASP6 assessment of contact prediction. Proteins. 2005 ;61 Suppl 7:214-24.
Nair R, Rost B. Mimicking cellular sorting improves prediction of subcellular localization. J Mol Biol. 2005 ;348(1):85-100.
Punta M, Rost B. PROFcon: novel prediction of long-range contacts. Bioinformatics. 2005 ;21(13):2960-8.
2003
Rost B. Prediction in 1D: secondary structure, membrane helices, and accessibility. Methods Biochem Anal. 2003 ;44:559-87.
Andersen CAF, Rost B. Secondary structure assignment. Methods Biochem Anal. 2003 ;44:341-63.
2002
Marti-Renom MA, Madhusudhan MS, Fiser A, Rost B, Sali A. Reliability of assessment of protein structure prediction methods. Structure. 2002 ;10(3):435-40.
Chen CPeter, Rost B. State-of-the-art in membrane protein prediction. Appl Bioinformatics. 2002 ;1(1):21-35.