Publications

Found 27 results

Filters: Keyword is Internet and Author is Rost, Burkhard [Clear All Filters]

2014

Goldberg T, Hecht M, Hamp T, Karl T, Yachdav G, Ahmed N, Altermann U, Angerer P, Ansorge S, Balasz K, et al. LocTree3 prediction of localization. Nucleic Acids Res. 2014 ;42(Web Server issue):W350-5.

Yachdav G, Kloppmann E, Kaján L, Hecht M, Goldberg T, Hamp T, Hönigschmid P, Schafferhans A, Roos M, Bernhofer M, et al. PredictProtein--an open resource for online prediction of protein structural and functional features. Nucleic Acids Res. 2014 ;42(Web Server issue):W337-43.

Cejuela JMiguel, McQuilton P, Ponting L, Marygold SJ, Stefancsik R, Millburn GH, Rost B. tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles. Database (Oxford). 2014 ;2014:bau033.

2012

Schaefer C, Meier A, Rost B, Bromberg Y. SNPdbe: constructing an nsSNP functional impacts database. Bioinformatics. 2012 ;28(4):601-2.

2010

Wainreb G, Ashkenazy H, Bromberg Y, Starovolsky-Shitrit A, Haliloglu T, Ruppin E, Avraham KB, Rost B, Ben-Tal N. MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. Nucleic Acids Res. 2010 ;38(Web Server issue):W523-8.

2009

Bromberg Y, Yachdav G, Ofran Y, Schneider R, Rost B. New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'. Curr Opin Drug Discov Devel. 2009 ;12(3):408-19.

2008

Lippi M, Passerini A, Punta M, Rost B, Frasconi P. MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence. Bioinformatics. 2008 ;24(18):2094-5.

2006

Schlessinger A, Ofran Y, Yachdav G, Rost B. Epitome: database of structure-inferred antigenic epitopes. Nucleic Acids Res. 2006 ;34(Database issue):D777-80.

Bigelow H, Rost B. PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins. Nucleic Acids Res. 2006 ;34(Web Server issue):W186-8.

2005

Graña O, Eyrich VA, Pazos F, Rost B, Valencia A. EVAcon: a protein contact prediction evaluation service. Nucleic Acids Res. 2005 ;33(Web Server issue):W347-51.

2004

Liu J, Hegyi H, Acton TB, Montelione GT, Rost B. Automatic target selection for structural genomics on eukaryotes. Proteins. 2004 ;56(2):188-200.

Liu J, Rost B. CHOP: parsing proteins into structural domains. Nucleic Acids Res. 2004 ;32(Web Server issue):W569-71.

Nair R, Rost B. LOCnet and LOCtarget: sub-cellular localization for structural genomics targets. Nucleic Acids Res. 2004 ;32(Web Server issue):W517-21.

Mika S, Rost B. NLProt: extracting protein names and sequences from papers. Nucleic Acids Res. 2004 ;32(Web Server issue):W634-7.

Rost B, Yachdav G, Liu J. The PredictProtein server. Nucleic Acids Res. 2004 ;32(Web Server issue):W321-6.

Wunderlich Z, Acton TB, Liu J, Kornhaber G, Everett J, Carter P, Lan N, Echols N, Gerstein M, Rost B, et al. The protein target list of the Northeast Structural Genomics Consortium. Proteins. 2004 ;56(2):181-7.

2003

Carter P, Andersen CAF, Rost B. DSSPcont: Continuous secondary structure assignments for proteins. Nucleic Acids Res. 2003 ;31(13):3293-5.

Y Y Koh I, Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Eswar N, Graña O, Pazos F, Valencia A, Sali A, et al. EVA: Evaluation of protein structure prediction servers. Nucleic Acids Res. 2003 ;31(13):3311-5.

Nair R, Rost B. LOC3D: annotate sub-cellular localization for protein structures. Nucleic Acids Res. 2003 ;31(13):3337-40.

Eyrich VA, Rost B. META-PP: single interface to crucial prediction servers. Nucleic Acids Res. 2003 ;31(13):3308-10.

Liu J, Rost B. NORSp: Predictions of long regions without regular secondary structure. Nucleic Acids Res. 2003 ;31(13):3833-5.

Rost B, Liu J. The PredictProtein server. Nucleic Acids Res. 2003 ;31(13):3300-4.

Kernytsky A, Rost B. Static benchmarking of membrane helix predictions. Nucleic Acids Res. 2003 ;31(13):3642-4.

Mika S, Rost B. UniqueProt: Creating representative protein sequence sets. Nucleic Acids Res. 2003 ;31(13):3789-91.

2002

Andersen CAF, Palmer AG, Brunak S, Rost B. Continuum secondary structure captures protein flexibility. Structure. 2002 ;10(2):175-84.

Pollastri G, Przybylski D, Rost B, Baldi P. Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins. 2002 ;47(2):228-35.

Liu J, Rost B. Target space for structural genomics revisited. Bioinformatics. 2002 ;18(7):922-33.