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Found 24 results
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Protein Structure, Tertiary
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2012
Snyder DA
,
Aramini JM
,
Yu B
,
Huang YJ
,
Xiao R
,
Cort JR
,
Shastry R
,
Ma L-C
,
Liu J
,
Rost B
, et al.
Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus.
Proteins. 2012 ;80(7):1901-6.
2011
Cao Y
,
Jin X
,
Levin EJ
,
Huang H
,
Zong Y
,
Quick M
,
Weng J
,
Pan Y
,
Love J
,
Punta M
, et al.
Crystal structure of a phosphorylation-coupled saccharide transporter.
Nature. 2011 ;473(7345):50-4.
Yang Y
,
Ramelot TA
,
Cort JR
,
Wang D
,
Ciccosanti C
,
Hamilton K
,
Nair R
,
Rost B
,
Acton TB
,
Xiao R
, et al.
Solution NMR structure of photosystem II reaction center protein Psb28 from Synechocystis sp. Strain PCC 6803.
Proteins. 2011 ;79(1):340-4.
2010
Tang Y
,
Xiao R
,
Ciccosanti C
,
Janjua H
,
Lee DYup
,
Everett JK
,
Swapna GVT
,
Acton TB
,
Rost B
,
Montelione GT
.
Solution NMR structure of Lin0431 protein from Listeria innocua reveals high structural similarity with domain II of bacterial transcription antitermination protein NusG.
Proteins. 2010 ;78(11):2563-8.
Singarapu KKumar
,
Mills JL
,
Xiao R
,
Acton T
,
Punta M
,
Fischer M
,
Honig B
,
Rost B
,
Montelione GT
,
Szyperski T
.
Solution NMR structures of proteins VPA0419 from Vibrio parahaemolyticus and yiiS from Shigella flexneri provide structural coverage for protein domain family PFAM 04175.
Proteins. 2010 ;78(3):779-84.
2009
Dessailly BH
,
Nair R
,
Jaroszewski L
,
J Fajardo E
,
Kouranov A
,
Lee D
,
Fiser A
,
Godzik A
,
Rost B
,
Orengo C
.
PSI-2: structural genomics to cover protein domain family space.
Structure. 2009 ;17(6):869-81.
Rossi P
,
Aramini JM
,
Xiao R
,
Chen CX
,
Nwosu C
,
Owens LA
,
Maglaqui M
,
Nair R
,
Fischer M
,
Acton TB
, et al.
Structural elucidation of the Cys-His-Glu-Asn proteolytic relay in the secreted CHAP domain enzyme from the human pathogen Staphylococcus saprophyticus.
Proteins. 2009 ;74(2):515-9.
Bertonati C
,
Punta M
,
Fischer M
,
Yachdav G
,
Forouhar F
,
Zhou W
,
Kuzin AP
,
Seetharaman J
,
Abashidze M
,
Ramelot TA
, et al.
Structural genomics reveals EVE as a new ASCH/PUA-related domain.
Proteins. 2009 ;75(3):760-73.
2008
Singarapu KKumar
,
Xiao R
,
Acton T
,
Rost B
,
Montelione GT
,
Szyperski T
.
NMR structure of the peptidyl-tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide chain release factors.
Proteins. 2008 ;71(2):1027-31.
Aramini JM
,
Rossi P
,
Huang YJ
,
Zhao L
,
Jiang M
,
Maglaqui M
,
Xiao R
,
Locke J
,
Nair R
,
Rost B
, et al.
Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad.
Biochemistry. 2008 ;47(37):9715-7.
2007
Schlessinger A
,
Punta M
,
Rost B
.
Natively unstructured regions in proteins identified from contact predictions.
Bioinformatics. 2007 ;23(18):2376-84.
2005
Graña O
,
Baker D
,
MacCallum RM
,
Meiler J
,
Punta M
,
Rost B
,
Tress ML
,
Valencia A
.
CASP6 assessment of contact prediction.
Proteins. 2005 ;61 Suppl 7:214-24.
Moult J
,
Fidelis K
,
Rost B
,
Hubbard T
,
Tramontano A
.
Critical assessment of methods of protein structure prediction (CASP)--round 6.
Proteins. 2005 ;61 Suppl 7:3-7.
Schlessinger A
,
Rost B
.
Protein flexibility and rigidity predicted from sequence.
Proteins. 2005 ;61(1):115-26.
2004
Liu J
,
Hegyi H
,
Acton TB
,
Montelione GT
,
Rost B
.
Automatic target selection for structural genomics on eukaryotes.
Proteins. 2004 ;56(2):188-200.
Liu J
,
Rost B
.
CHOP: parsing proteins into structural domains.
Nucleic Acids Res. 2004 ;32(Web Server issue):W569-71.
Liu J
,
Rost B
.
CHOP proteins into structural domain-like fragments.
Proteins. 2004 ;55(3):678-88.
Rost B
,
Yachdav G
,
Liu J
.
The PredictProtein server.
Nucleic Acids Res. 2004 ;32(Web Server issue):W321-6.
Wunderlich Z
,
Acton TB
,
Liu J
,
Kornhaber G
,
Everett J
,
Carter P
,
Lan N
,
Echols N
,
Gerstein M
,
Rost B
, et al.
The protein target list of the Northeast Structural Genomics Consortium.
Proteins. 2004 ;56(2):181-7.
Liu J
,
Rost B
.
Sequence-based prediction of protein domains.
Nucleic Acids Res. 2004 ;32(12):3522-30.
2003
Liu J
,
Rost B
.
Domains, motifs and clusters in the protein universe.
Curr Opin Chem Biol. 2003 ;7(1):5-11.
Rost B
,
Liu J
.
The PredictProtein server.
Nucleic Acids Res. 2003 ;31(13):3300-4.
Mika S
,
Rost B
.
UniqueProt: Creating representative protein sequence sets.
Nucleic Acids Res. 2003 ;31(13):3789-91.
2002
Rost B
.
Did evolution leap to create the protein universe?
. Curr Opin Struct Biol. 2002 ;12(3):409-16.