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Publications
Found 16 results
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Keyword
is
Sequence Homology, Amino Acid
and
Author
is
Rost, Burkhard
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2014
Goldberg T
,
Hecht M
,
Hamp T
,
Karl T
,
Yachdav G
,
Ahmed N
,
Altermann U
,
Angerer P
,
Ansorge S
,
Balasz K
, et al.
LocTree3 prediction of localization.
Nucleic Acids Res. 2014 ;42(Web Server issue):W350-5.
Yachdav G
,
Kloppmann E
,
Kaján L
,
Hecht M
,
Goldberg T
,
Hamp T
,
Hönigschmid P
,
Schafferhans A
,
Roos M
,
Bernhofer M
, et al.
PredictProtein--an open resource for online prediction of protein structural and functional features.
Nucleic Acids Res. 2014 ;42(Web Server issue):W337-43.
2013
Hamp T
,
Kassner R
,
Seemayer S
,
Vicedo E
,
Schaefer C
,
Achten D
,
Auer F
,
Boehm A
,
Braun T
,
Hecht M
, et al.
Homology-based inference sets the bar high for protein function prediction.
BMC Bioinformatics. 2013 ;14 Suppl 3:S7.
2010
Wainreb G
,
Ashkenazy H
,
Bromberg Y
,
Starovolsky-Shitrit A
,
Haliloglu T
,
Ruppin E
,
Avraham KB
,
Rost B
,
Ben-Tal N
.
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.
Nucleic Acids Res. 2010 ;38(Web Server issue):W523-8.
2009
Bertonati C
,
Punta M
,
Fischer M
,
Yachdav G
,
Forouhar F
,
Zhou W
,
Kuzin AP
,
Seetharaman J
,
Abashidze M
,
Ramelot TA
, et al.
Structural genomics reveals EVE as a new ASCH/PUA-related domain.
Proteins. 2009 ;75(3):760-73.
Punta M
,
Love J
,
Handelman S
,
Hunt JF
,
Shapiro L
,
Hendrickson WA
,
Rost B
.
Structural genomics target selection for the New York consortium on membrane protein structure.
J Struct Funct Genomics. 2009 ;10(4):255-68.
2007
Aramini JM
,
Huang YJ
,
Swapna GVT
,
Cort JR
,
Rajan PK
,
Xiao R
,
Shastry R
,
Acton TB
,
Liu J
,
Rost B
, et al.
Solution NMR structure of Escherichia coli ytfP expands the structural coverage of the UPF0131 protein domain family.
Proteins. 2007 ;68(3):789-95.
2006
Schlessinger A
,
Yachdav G
,
Rost B
.
PROFbval: predict flexible and rigid residues in proteins.
Bioinformatics. 2006 ;22(7):891-3.
2005
Powers R
,
Mirkovic N
,
Goldsmith-Fischman S
,
Acton TB
,
Chiang Y
,
Huang YJ
,
Ma L
,
Rajan PK
,
Cort JR
,
Kennedy MA
, et al.
Solution structure of Archaeglobus fulgidis peptidyl-tRNA hydrolase (Pth2) provides evidence for an extensive conserved family of Pth2 enzymes in archea, bacteria, and eukaryotes.
Protein Sci. 2005 ;14(11):2849-61.
2004
Liu J
,
Rost B
.
CHOP: parsing proteins into structural domains.
Nucleic Acids Res. 2004 ;32(Web Server issue):W569-71.
Liu J
,
Rost B
.
CHOP proteins into structural domain-like fragments.
Proteins. 2004 ;55(3):678-88.
Nair R
,
Rost B
.
LOCnet and LOCtarget: sub-cellular localization for structural genomics targets.
Nucleic Acids Res. 2004 ;32(Web Server issue):W517-21.
2003
Liu J
,
Rost B
.
Domains, motifs and clusters in the protein universe.
Curr Opin Chem Biol. 2003 ;7(1):5-11.
Nair R
,
Rost B
.
LOC3D: annotate sub-cellular localization for protein structures.
Nucleic Acids Res. 2003 ;31(13):3337-40.
Carter P
,
Liu J
,
Rost B
.
PEP: Predictions for Entire Proteomes.
Nucleic Acids Res. 2003 ;31(1):410-3.
2002
Rost B
.
Enzyme function less conserved than anticipated.
J Mol Biol. 2002 ;318(2):595-608.