Difference between revisions of "The bioinformatics lab SS 2011"

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Revision as of 11:23, 18 April 2011

This practical is a hands-on training that will make you successful in a Bioinformatic lab! This term we have a focus on virtual systems and Cloud Computing.

More details can be found at the http://rostlab.informatik.tu-muenchen.de/cms/biolab2011/ website.

Materials from old courses are available at The_bioinformatics_lab. There you can find many hints and tips and the protocols and presentation slides from last year. You may use them, but especially the protocols and presentations you have to prepare with your own content and own style!


Contents

External media / installing a Linux OS / Debian stable / Linux kernel (Laszlo)

  1. date: 2011 / 05 / 02
  2. responsible: XXX
  3. topics: XXX
  4. links for preparation:
    • abc.com

Programming Challenge

Hints and tips

Advanced challenge

Materials and methods

  • Session1_debriefing.pdf

Report

By XXX XXX:

  • slides.pdf
  • protocoll.pdf


Shell scripts, command line (terminal) editors and compilation (Markus)

  1. date: 2011 / 05 / 02
  2. responsible: XXX
  3. topics: XXX
  4. links for preparation:
    • abc.com

Programming Challenge

Hints and tips

Advanced challenge

Materials and methods

  • Session1_debriefing.pdf

Report

By XXX XXX:

  • slides.pdf
  • protocoll.pdf


Virtualization (Laszlo)

        1. Command line test
  1. date: 2011 / 05 / 02
  2. responsible: XXX
  3. topics: XXX
  4. links for preparation:
    • abc.com

Programming Challenge

Hints and tips

Advanced challenge

Materials and methods

  • Session1_debriefing.pdf

Report

By XXX XXX:

  • slides.pdf
  • protocoll.pdf


Amazon EC2 (advisor: Markus)

       1. VI test

AWS services supported in the grants include Amazon EC2, Amazon S3, Amazon SimpleDB, Amazon RDS, Amazon SQS, Amazon CloudFront and Amazon Elastic MapReduce. Cluster GPU Instances for Amazon EC2 are only available for grant recipients on a limited basis by written consent of the program administrator.

  1. date: 2011 / 05 / 02
  2. responsible: XXX
  3. topics: XXX
  4. links for preparation:
    • abc.com

Programming Challenge

Hints and tips

Advanced challenge

Materials and methods

  • Session1_debriefing.pdf

Report

By XXX XXX:

  • slides.pdf
  • protocoll.pdf


User management / directory services (Laszlo)

  1. date: 2011 / 05 / 02
  2. responsible: XXX
  3. topics: XXX
  4. links for preparation:
    • abc.com

Programming Challenge

Hints and tips

Advanced challenge

Materials and methods

  • Session1_debriefing.pdf

Report

By XXX XXX:

  • slides.pdf
  • protocoll.pdf


Mail, DNS (Laszlo)

  1. date: 2011 / 05 / 02
  2. responsible: XXX
  3. topics: XXX
  4. links for preparation:
    • abc.com

Programming Challenge

Hints and tips

Advanced challenge

Materials and methods

  • Session1_debriefing.pdf

Report

By XXX XXX:

  • slides.pdf
  • protocoll.pdf


Webserver (Markus)

  1. date: 2011 / 05 / 02
  2. responsible: XXX
  3. topics: XXX
  4. links for preparation:
    • abc.com

Programming Challenge

Hints and tips

Advanced challenge

Materials and methods

  • Session1_debriefing.pdf

Report

By XXX XXX:

  • slides.pdf
  • protocoll.pdf


Databases and SQL (Markus)

  1. date: 2011 / 05 / 02
  2. responsible: XXX
  3. topics: XXX
  4. links for preparation:
    • abc.com

Programming Challenge

Hints and tips

Advanced challenge

Materials and methods

  • Session1_debriefing.pdf

Report

By XXX XXX:

  • slides.pdf
  • protocoll.pdf


Default web applications - CMS and Wiki (Markus)

  1. date: 2011 / 05 / 02
  2. responsible: XXX
  3. topics: XXX
  4. links for preparation:
    • abc.com

Programming Challenge

Hints and tips

Advanced challenge

Materials and methods

  • Session1_debriefing.pdf

Report

By XXX XXX:

  • slides.pdf
  • protocoll.pdf



Computer Clusters and External Services : Excursion LRZ

  1. date: 2010 / 06 / 28
  2. responsible: Markus
  3. topics: computer cluster hardware, batch systems
  4. links for preparation:

Programming Challenge

We will get a guided tour in the LRZ to see all the server and services in live operation.

Hints and Tips

  • We meet at 2 p.m. in the rostlab!
  • Please be in time.
  • A photo identification is required.
  • There is air condition in the server rooms. Please dress appropriate.

Modules in programming, development and design - packages (Laszlo)

  1. date: 2011 / 05 / 02
  2. responsible: XXX
  3. topics: XXX
  4. links for preparation:
    • abc.com

Programming Challenge

Hints and tips

Advanced challenge

Materials and methods

  • Session1_debriefing.pdf

Report

By XXX XXX:

  • slides.pdf
  • protocoll.pdf