RostDB

From Rost Lab Open
Revision as of 15:26, 19 March 2014 by Hampt (talk | contribs)

Package to download and postprocess the RostDB databases. Contact hampt - at rostlab - org if you want to install RostDB for your own lab.

Databases to download / mirror

We use wget or rsync!

  • Uniprot/Trembl
  • Uniprot/Swiss-Prot
  • PDB
  • Uniref
  • Prints
  • BLOCKS
  • Pfam
  • Gene Ontology
  • HSSP
  • DSSP
  • HHBlits

Post-Processing Steps

After downloading all database are verioned and mirrored to fast local disks.

Specialized update scripts (Rostlab internal):

  • split_swiss
  • big
  • bigX
  • cluster_upd
  • parseGO
  • pdb_fasta_upd
  • update_db_page