Difference between revisions of "RostDB"

From Rost Lab Open
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== Post-Processing Steps ==
 
== Post-Processing Steps ==
After downloading all database are verioned and mirrored to fast local disks.
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After downloading, all databases are verioned and mirrored to fast local disks.
   
 
Specialized update scripts (Rostlab internal):
 
Specialized update scripts (Rostlab internal):

Revision as of 15:26, 19 March 2014

Package to download and postprocess the RostDB databases. Contact hampt - at rostlab - org if you want to install RostDB for your own lab.

Databases to download / mirror

We use wget or rsync!

  • Uniprot/Trembl
  • Uniprot/Swiss-Prot
  • PDB
  • Uniref
  • Prints
  • BLOCKS
  • Pfam
  • Gene Ontology
  • HSSP
  • DSSP
  • HHBlits

Post-Processing Steps

After downloading, all databases are verioned and mirrored to fast local disks.

Specialized update scripts (Rostlab internal):

  • split_swiss
  • big
  • bigX
  • cluster_upd
  • parseGO
  • pdb_fasta_upd
  • update_db_page