Difference between revisions of "RostDB"

From Rost Lab Open
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Package to download and postprocess the rost_db databases. Contact hampt - at rostlab - org if you want to install RostDB at your own lab.
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Package to download and postprocess the RostDB databases. Contact hampt - at rostlab - org if you want to install RostDB for your own lab.
 
<!-- * we do packaging here: svn+ssh://rostlab.informatik.tu-muenchen.de/mnt/project/subversion/slashdata.svn_repo/branches/packaging
 
<!-- * we do packaging here: svn+ssh://rostlab.informatik.tu-muenchen.de/mnt/project/subversion/slashdata.svn_repo/branches/packaging
 
* we will have one makefile, this is extendable! -->
 
* we will have one makefile, this is extendable! -->

Revision as of 15:26, 19 March 2014

Package to download and postprocess the RostDB databases. Contact hampt - at rostlab - org if you want to install RostDB for your own lab.

Databases to download / mirror

We use wget or rsync!

  • Uniprot/Trembl
  • Uniprot/Swiss-Prot
  • PDB
  • Uniref
  • Prints
  • BLOCKS
  • Pfam
  • Gene Ontology
  • HSSP
  • DSSP
  • HHBlits

Post-Processing Steps

After downloading all database are verioned and mirrored to fast local disks.

Specialized update scripts (Rostlab internal):

  • split_swiss
  • big
  • bigX
  • cluster_upd
  • parseGO
  • pdb_fasta_upd
  • update_db_page