Example for simple sequence

Protein sequence (or alignment) in SAF format Specification of compulsary features of SAF.

Names should contain up to 14 characters and no blanks.
Please use the same names for the same protein in all rows.
All sequences must have the same length.
To mark insertions, please use a dot '.'.

The following are valid SAF alignments.

Example 1

# SAF
t2_11751 EFQEDQENVN PEKAAPAQQP RTRAGLAVLR AGNSRGAGGA PTLPETLNVA
name_1   EFQEDQENVN PEKAAPAQQP RTRAGLAVLR AGNSRGAGGA PTLPETLNVA
name_2   ...EDQENvk PEKAAPAQQP RTRAGLAVLR AGNSRG.... ...PETLNV.
name_22  ...EDQENvk PEKAAPAQQP RTRAGLAVLR AGNSRG.... ...PETLNV.

t2_11751 GGAPTLPETL NVAGGAPTLP ETLNVAGGAP TLPETLNV
name_1   GGAPTLPETL NVAGGAPTLP ETLNVAGGAP TLPETLNV

Example 2

# SAF
                    10         20         30         40         
t2_11751 EFQEDQENVN PEKAAPAQQP RTRAGLAVLR AGNSRGAGGA PTLPETLNVA
name_1   EFQEDQENVN PEKAAPAQQP RTRAGLAVLR AGNSRGAGGA PTLPETLNVA
name_2   ...EDQENvk PEKAAPAQQP RTRAGLAVLR AGNSRG.... ...PETLNV.
name_22  ...EDQENvk PEKAAPAQQP RTRAGLAVLR AGNSRG.... ...PETLNV.
         50         60         70         80         90
t2_11751 GGAPTLPETL NVAGGAPTLP ETLNVAGGAP TLPETLNV
# comment
name_22  .......... .......... .......... ........
name_1   GGAPTLPETL NVAGGAPTLP ETLNVAGGAP TLPETLNV
name_2   .......... NVAGGAPTLP