This file contains alignments of the query sequence with consensus sequences.
On the left side: consensus sequences are translated back into raw (real) sequences.
On the right side: consensus sequences are not translated.
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-------- Raw sequences -------- | -------- Consensus sequences (in the "Sbjct:" fields) --------
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BLASTP 2.2.9 [May-01-2004] | BLASTP 2.2.9 [May-01-2004]
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Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, | Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), | Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search | "Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402. | programs", Nucleic Acids Res. 25:3389-3402.
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Query= 1cyx mol:protein length:205 Cyoa | Query= 1cyx mol:protein length:205 Cyoa
(205 letters) | (205 letters)
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Database: pdbcons_100 | Database: pdbcons_100
22,314 sequences; 5,192,384 total letters | 22,314 sequences; 5,192,384 total letters
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Searching.............................................done | Searching.............................................done
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Score E | Score E
Sequences producing significant alignments: (bits) Value | Sequences producing significant alignments: (bits) Value
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1iby_A 100 2e-22 | 1iby_A 100 2e-22
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>1iby_A | >1iby_A
Length = 112 | Length = 112
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Score = 100 bits (249), Expect = 2e-22 | Score = 100 bits (249), Expect = 2e-22
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%) | Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
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Query: 31 IYPEQGIATVNEIAFPANTPVYFKVT-SNSVMHSFFIPRLGSQIYAMAGMQTRLHLIANE 89 | Query: 31 IYPEQGIATVNEIAFPANTPVYFKVT-SNSVMHSFFIPRLGSQIYAMAGMQTRLHLIANE 89
+ + + N + P PV + +T S+ V H ++IP G ++ A GM N | + + + N + P PV + +T S+ V H ++IP G ++ A GM N
Sbjct: 28 IRAFNVLNEPETLVVKKGDAVKVVVENKSPISEGFSIDAFGVQEVIKAGETKTISFTADK 87 | Sbjct: 28 MNQFRLLEVDNRLVVPMGDPVRWVLTNSDDVWHGWWIPSHGIKMDACHGMTWTYWFTFNR 87
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Query: 90 PGTYDGICAEICGPGHSGMKFKAIATP 116 | Query: 90 PGTYDGICAEICGPGHSGMKFKAIATP 116
P Y G C+E CG H M | P Y G C+E CG H M
Sbjct: 88 AGAFTIWCQLHPKNIH--LPGTLNVVE 112 | Sbjct: 88 PWMYYGQCSEYCGANH--MPGVVEVVE 112
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Database: pdbcons_100 | Database: pdbcons_100
Posted date: Sep 25, 2006 3:27 PM | Posted date: Sep 25, 2006 3:27 PM
Number of letters in database: 5,192,384 | Number of letters in database: 5,192,384
Number of sequences in database: 22,314 | Number of sequences in database: 22,314
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Lambda K H | Lambda K H
0.322 0.150 0.450 | 0.322 0.150 0.450
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Lambda K H | Lambda K H
0.267 0.0460 0.140 | 0.267 0.0460 0.140
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Matrix: BLOSUM62 | Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1 | Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,437,015 | Number of Hits to DB: 4,437,015
Number of Sequences: 22314 | Number of Sequences: 22314
Number of extensions: 359971 | Number of extensions: 359971
Number of successful extensions: 2292 | Number of successful extensions: 2292
Number of sequences better than 10.0: 290 | Number of sequences better than 10.0: 290
Number of HSP's better than 10.0 without gapping: 212 | Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 78 | Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1953 | Number of HSP's that attempted gapping in prelim test: 1953
Number of HSP's gapped (non-prelim): 394 | Number of HSP's gapped (non-prelim): 394
length of query: 205 | length of query: 205
length of database: 5,192,384 | length of database: 5,192,384
effective HSP length: 87 | effective HSP length: 87
effective length of query: 118 | effective length of query: 118
effective length of database: 3,251,066 | effective length of database: 3,251,066
effective search space: 383625788 | effective search space: 383625788
effective search space used: 383625788 | effective search space used: 383625788
T: 11 | T: 11
A: 40 | A: 40
X1: 16 ( 7.4 bits) | X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits) | X2: 38 (14.6 bits)
X3: 64 (24.7 bits) | X3: 64 (24.7 bits)
S1: 41 (21.8 bits) | S1: 41 (21.8 bits)
S2: 54 (25.2 bits) | S2: 54 (25.2 bits)
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