Input sequence

>YOL113W SKM1, Chr XV from 104325-106292
MKGVKKEGWISYKVDGLFSFLWQKRYLVLNDSYLAFYKSDKCNEEPVLSVPLTSITNVSR
IQLKQNCFEILRATDQKENISPINSYFYESNSKRSIFISTRTERDLHGWLDAIFAKCPLL
SGVSSPTNFTHKVHVGFDPKVGNFVGVPDSWAKLLQTSEITYDDWNRNSKAVIKALQFYE
DYNGLDTMQFNDHLNTSLDLKPLKSPTRYIINKRTNSIKRSVSRTLRKGKTDSILPVYQS
ELKPFPRPSDDDYKFTNIEDNKVREEGRVHVSKESTADSQTKQLGKKEQKVIQSHLRRHD
NNSTFRPHRLAPSAPATKNHDSKTKWHKEDLLELKNNDDSNEIIMKMKTVAIDVNPRPYF
QLVEKAGQGASGAVYLSKRIKLPQENDPRFLKSHCHRVVGERVAIKQIRLSEQPKKQLIM
NELLVMNDSRQENIVNFLEAYIIDDEELWVIMEYMEGGCLTDILDAVARSNTGEHSSPLN
ENQMAYIVKETCQGLKFLHNKKIIHRDIKSDNILLNSQGLVKITDFGFCVELTEKRSKRA
TMVGTPYWMAPEIVNQKGYDEKVDVWSLGIMLIEMIEGEPPYLNEDPLKALYLIANNGSP
KLRHPESVSKQTKQFLDACLQVNVESRASVRKLLTFEFLSMACSPEQLKVSLKWH

TEXT output

Result of CHOP prediction (Jinfeng Liu & Burkhard Rost)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Jinfeng Liu & Burkhard Rost
Proteins. (2004) in press
________________________________________________________
# Query  : yol113w
# Length : 655
Fragments    Homologue(region)      E_value      Method
----------   --------------------   ----------   --------------------
4-118        PF00169(1-92)          7.5e-19      HMMER/Pfam_ls
123-161      1eesB1(8-46)           7e-09        BLAST/prism_trim
162-363      NULL                   NULL         NULL
364-453      1f3mC1(5-76)           2e-15        BLAST/prism_trim
479-523      1erk_2(12-56)          4e-04        BLAST/prism_trim
548-633      1bygA3(10-94)          3e-04        BLAST/prism_trim
//

HTML output

Result of CHOP prediction (Jinfeng Liu & Burkhard Rost)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Jinfeng Liu & Burkhard Rost
Proteins. (2004) in press
________________________________________________________