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Transmembrane helices for pyrab (Pyrococcus abyssi)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

323 cab50676_1 1 in 16 |ali|phd|phdHtm| 324 4 3 -4.04 97 MLALGIEGTAHTLGIGIVSE

324 cab50398_1 1 in 10 |ali|phd|phdHtm| 222 9 6 -10.22 29 MRRGAIGIGTLIVFIAMVLV

325 cab50399_1 1 in 10 |ali|phd|phdHtm| 219 6 6 -6.82 30 MHRKGAIGIGTLIVFIAMVL

326 cab50400_1 1 in 10 |ali|phd|phdHtm| 175 9 8 -13.92 39 MKNLQGGAWQMARRGAIGIG

327 cab48927_1 1 in 6 |ali|phd|phdHtm| 61 9 9 -21.00 55 MPELQERIRNFLKESKRVFL

328 cab50308_1 1 in 3 |ali|phd|phdHtm| 186 3 7 -3.28 43 MSIYTLVKSKNSLEGFKMRK

329 cab49931_1 1 in 2 |ali|phd|phdHtm| 229 8 5 -8.00 117 MLAVFPVGFDEKFIIRALMR

330 cab50229_1 1 in 2 |ali|phd|phdHtm| 262 3 4 -3.96 128 MALYFIGLGLYDEKDITLKG

331 cab49392_1 1 in 1 |ali|phd|phdHtm| 239 8 5 -8.50 30 MRKGGLLGLALFLVVLVIVG

332 cab49447_1 1 in 1 |ali|phd|phdHtm| 173 4 7 -4.22 27 MLLRCLLMKILKLIIVLSLI

333 cab49647_1 1 in 1 |ali|phd|phdHtm| 862 9 1 -9.86 46 MKSTVSFLRSSRLEEFNLES

334 cab49722_1 1 in 1 |ali|phd|phdHtm| 686 4 1 -4.00 28 MRRGFIFTLDALLSLILVVT

335 cab49932_1 1 in 1 |ali|phd|phdHtm| 222 7 6 -7.46 181 MTCCAYFKDGRCVESMEDHI

336 cab50102_1 1 in 1 |ali|phd|phdHtm| 213 9 6 -16.00 151 MDKPHIAIIGLRGIPSKYGG

337 cab50191_1 1 in 1 |ali|phd|phdHtm| 134 2 9 -2.75 36 MRIKAKDAIPVLIAILALAL

338 cab50359_1 1 in 1 |ali|phd|phdHtm| 452 8 2 -8.00 134 MSWDEMYRDAYERVLNSIGK

339 cab50551_1 1 in 1 |ali|phd|phdHtm| 805 4 2 -4.00 453 MGVVFMVSFAIYTTSGDVVY

340 cab50681_1 1 in 1 |ali|phd|phdHtm| 235 1 6 -1.09 31 MTGGTVSSKLFLLILVLAII

341 cab50468_1 1 out 15 |ali|phd|phdHtm| 299 9 4 10.40 25 MMISAGGVALIILGIFLLIM

342 cab49571_1 1 out 14 |ali|phd|phdHtm| 268 9 5 15.35 23 MILPTNFFVTTIILLFILIF

343 cab49532_1 1 out 12 |ali|phd|phdHtm| 249 0 5 0.40 163 MMEKPEGLKLIDENGRRIDG

344 cab49906_1 1 out 6 |ali|phd|phdHtm| 446 3 2 3.44 387 MLCNQCSMSLSGGCTVRGVC

345 cab50002_1 1 out 6 |ali|phd|phdHtm| 268 2 6 2.23 221 MNALNFIVEALNEVRKRKPL

346 cab49574_1 1 out 5 |ali|phd|phdHtm| 429 9 2 11.40 325 MTQMEDAKKGVITDEMLYIA

347 cab50609_1 1 out 4 |ali|phd|phdHtm| 184 0 6 0.75 168 MCRVPVMVVSKEKLKVLSDR

348 cab49594_1 1 out 3 |ali|phd|phdHtm| 367 9 3 23.43 46 MITLGMLFELQDLWMQLSKN

349 cab50372_1 1 out 3 |ali|phd|phdHtm| 161 1 9 1.32 35 MRGFIPTFILAFLTYVLFTG

350 cab50508_1 1 out 3 |ali|phd|phdHtm| 595 9 2 24.00 484 MRRILISMLIITLMFPIVHG

351 cab49187_1 1 unk 2 |ali|phd|phdHtm| 286 0 4 0.00 19 MIWTWTILLFLTIIFGFFAF

352 cab50193_1 1 out 2 |ali|phd|phdHtm| 410 5 4 5.29 38 MKPTGKAYALMTIIWIITIL

353 cab50394_1 1 out 2 |ali|phd|phdHtm| 164 9 9 13.28 35 MPTGGELMSAGGPASELIMF

354 cab48944_1 1 out 1 |ali|phd|phdHtm| 140 2 9 2.84 56 MEIDKDLIERRLAEIKGAIN

355 cab49003_1 1 out 1 |ali|phd|phdHtm| 199 0 6 0.00 104 MLGVIFAVKLKRSDNYLIPI

356 cab49462_1 1 out 1 |ali|phd|phdHtm| 124 6 9 6.91 30 MLNFLKILAILSDEIAVLVF

357 cab49685_1 1 out 1 |ali|phd|phdHtm| 136 5 9 5.59 52 MHAVIDTDILIYDTFEDLEF

358 cab49686_1 1 out 1 |ali|phd|phdHtm| 107 5 9 5.67 37 MNPENKLMLIAYAIFTIAGI

359 cab49724_1 1 out 1 |ali|phd|phdHtm| 148 5 7 5.47 37 MTEGVFVSKSRGQTAIEELF

360 cab49730_1 1 out 1 |ali|phd|phdHtm| 694 9 1 15.00 654 MRKTGILLVALILLSLISGI

361 cab49733_1 1 out 1 |ali|phd|phdHtm| 527 9 2 12.00 451 MNVKRIALILLILMLEPLVL

362 cab49934_1 1 out 1 |ali|phd|phdHtm| 393 8 3 8.00 183 MILEAIARLPFEGLSKELIT

363 cab50014_1 1 out 1 |ali|phd|phdHtm| 107 8 9 8.50 38 MKPLVSRRIDFRRSSIHILT

364 cab50028_1 1 out 1 |ali|phd|phdHtm| 104 4 9 4.89 27 MIAWIYQIRVFGLIVLLLSF

365 cab50099_1 1 out 1 |ali|phd|phdHtm| 352 3 4 3.08 326 MYVNAPRVSIIILNWNGWKD

366 cab50115_1 1 out 1 |ali|phd|phdHtm| 103 9 9 10.58 77 MIELIPLLFGYSIMFFGALG

367 cab50343_1 1 out 1 |ali|phd|phdHtm| 277 9 4 12.00 191 MKSLLTFKTLLNFKYLIRPR

368 cab50390_1 1 out 1 |ali|phd|phdHtm| 642 9 2 28.00 637 MRKGIALLVMILILPLVSAS

369 cab50419_1 1 out 1 |ali|phd|phdHtm| 300 4 3 4.00 193 MKASKLAVKLLKTENDEIIY

370 cab50453_1 1 out 1 |ali|phd|phdHtm| 251 9 5 12.00 24 MDVGTLILIAVVVLIGSIVS

371 cab50550_1 1 out 1 |ali|phd|phdHtm| 758 9 1 24.57 751 MNMRVPSVLLILLFLLLLNG

372 cab50668_1 1 out 1 |ali|phd|phdHtm| 370 9 3 16.00 28 MEWSTLTTIFDTSLAVVFTW

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
323	cab50676_1	1	in	16	\|ali\|phd\|phdHtm\|	324	4	3	-4.04	97	MLALGIEGTAHTLGIGIVSE
324	cab50398_1	1	in	10	\|ali\|phd\|phdHtm\|	222	9	6	-10.22	29	MRRGAIGIGTLIVFIAMVLV
325	cab50399_1	1	in	10	\|ali\|phd\|phdHtm\|	219	6	6	-6.82	30	MHRKGAIGIGTLIVFIAMVL
326	cab50400_1	1	in	10	\|ali\|phd\|phdHtm\|	175	9	8	-13.92	39	MKNLQGGAWQMARRGAIGIG
327	cab48927_1	1	in	6	\|ali\|phd\|phdHtm\|	61	9	9	-21.00	55	MPELQERIRNFLKESKRVFL
328	cab50308_1	1	in	3	\|ali\|phd\|phdHtm\|	186	3	7	-3.28	43	MSIYTLVKSKNSLEGFKMRK
329	cab49931_1	1	in	2	\|ali\|phd\|phdHtm\|	229	8	5	-8.00	117	MLAVFPVGFDEKFIIRALMR
330	cab50229_1	1	in	2	\|ali\|phd\|phdHtm\|	262	3	4	-3.96	128	MALYFIGLGLYDEKDITLKG
331	cab49392_1	1	in	1	\|ali\|phd\|phdHtm\|	239	8	5	-8.50	30	MRKGGLLGLALFLVVLVIVG
332	cab49447_1	1	in	1	\|ali\|phd\|phdHtm\|	173	4	7	-4.22	27	MLLRCLLMKILKLIIVLSLI
333	cab49647_1	1	in	1	\|ali\|phd\|phdHtm\|	862	9	1	-9.86	46	MKSTVSFLRSSRLEEFNLES
334	cab49722_1	1	in	1	\|ali\|phd\|phdHtm\|	686	4	1	-4.00	28	MRRGFIFTLDALLSLILVVT
335	cab49932_1	1	in	1	\|ali\|phd\|phdHtm\|	222	7	6	-7.46	181	MTCCAYFKDGRCVESMEDHI
336	cab50102_1	1	in	1	\|ali\|phd\|phdHtm\|	213	9	6	-16.00	151	MDKPHIAIIGLRGIPSKYGG
337	cab50191_1	1	in	1	\|ali\|phd\|phdHtm\|	134	2	9	-2.75	36	MRIKAKDAIPVLIAILALAL
338	cab50359_1	1	in	1	\|ali\|phd\|phdHtm\|	452	8	2	-8.00	134	MSWDEMYRDAYERVLNSIGK
339	cab50551_1	1	in	1	\|ali\|phd\|phdHtm\|	805	4	2	-4.00	453	MGVVFMVSFAIYTTSGDVVY
340	cab50681_1	1	in	1	\|ali\|phd\|phdHtm\|	235	1	6	-1.09	31	MTGGTVSSKLFLLILVLAII
341	cab50468_1	1	out	15	\|ali\|phd\|phdHtm\|	299	9	4	10.40	25	MMISAGGVALIILGIFLLIM
342	cab49571_1	1	out	14	\|ali\|phd\|phdHtm\|	268	9	5	15.35	23	MILPTNFFVTTIILLFILIF
343	cab49532_1	1	out	12	\|ali\|phd\|phdHtm\|	249	0	5	0.40	163	MMEKPEGLKLIDENGRRIDG
344	cab49906_1	1	out	6	\|ali\|phd\|phdHtm\|	446	3	2	3.44	387	MLCNQCSMSLSGGCTVRGVC
345	cab50002_1	1	out	6	\|ali\|phd\|phdHtm\|	268	2	6	2.23	221	MNALNFIVEALNEVRKRKPL
346	cab49574_1	1	out	5	\|ali\|phd\|phdHtm\|	429	9	2	11.40	325	MTQMEDAKKGVITDEMLYIA
347	cab50609_1	1	out	4	\|ali\|phd\|phdHtm\|	184	0	6	0.75	168	MCRVPVMVVSKEKLKVLSDR
348	cab49594_1	1	out	3	\|ali\|phd\|phdHtm\|	367	9	3	23.43	46	MITLGMLFELQDLWMQLSKN
349	cab50372_1	1	out	3	\|ali\|phd\|phdHtm\|	161	1	9	1.32	35	MRGFIPTFILAFLTYVLFTG
350	cab50508_1	1	out	3	\|ali\|phd\|phdHtm\|	595	9	2	24.00	484	MRRILISMLIITLMFPIVHG
351	cab49187_1	1	unk	2	\|ali\|phd\|phdHtm\|	286	0	4	0.00	19	MIWTWTILLFLTIIFGFFAF
352	cab50193_1	1	out	2	\|ali\|phd\|phdHtm\|	410	5	4	5.29	38	MKPTGKAYALMTIIWIITIL
353	cab50394_1	1	out	2	\|ali\|phd\|phdHtm\|	164	9	9	13.28	35	MPTGGELMSAGGPASELIMF
354	cab48944_1	1	out	1	\|ali\|phd\|phdHtm\|	140	2	9	2.84	56	MEIDKDLIERRLAEIKGAIN
355	cab49003_1	1	out	1	\|ali\|phd\|phdHtm\|	199	0	6	0.00	104	MLGVIFAVKLKRSDNYLIPI
356	cab49462_1	1	out	1	\|ali\|phd\|phdHtm\|	124	6	9	6.91	30	MLNFLKILAILSDEIAVLVF
357	cab49685_1	1	out	1	\|ali\|phd\|phdHtm\|	136	5	9	5.59	52	MHAVIDTDILIYDTFEDLEF
358	cab49686_1	1	out	1	\|ali\|phd\|phdHtm\|	107	5	9	5.67	37	MNPENKLMLIAYAIFTIAGI
359	cab49724_1	1	out	1	\|ali\|phd\|phdHtm\|	148	5	7	5.47	37	MTEGVFVSKSRGQTAIEELF
360	cab49730_1	1	out	1	\|ali\|phd\|phdHtm\|	694	9	1	15.00	654	MRKTGILLVALILLSLISGI
361	cab49733_1	1	out	1	\|ali\|phd\|phdHtm\|	527	9	2	12.00	451	MNVKRIALILLILMLEPLVL
362	cab49934_1	1	out	1	\|ali\|phd\|phdHtm\|	393	8	3	8.00	183	MILEAIARLPFEGLSKELIT
363	cab50014_1	1	out	1	\|ali\|phd\|phdHtm\|	107	8	9	8.50	38	MKPLVSRRIDFRRSSIHILT
364	cab50028_1	1	out	1	\|ali\|phd\|phdHtm\|	104	4	9	4.89	27	MIAWIYQIRVFGLIVLLLSF
365	cab50099_1	1	out	1	\|ali\|phd\|phdHtm\|	352	3	4	3.08	326	MYVNAPRVSIIILNWNGWKD
366	cab50115_1	1	out	1	\|ali\|phd\|phdHtm\|	103	9	9	10.58	77	MIELIPLLFGYSIMFFGALG
367	cab50343_1	1	out	1	\|ali\|phd\|phdHtm\|	277	9	4	12.00	191	MKSLLTFKTLLNFKYLIRPR
368	cab50390_1	1	out	1	\|ali\|phd\|phdHtm\|	642	9	2	28.00	637	MRKGIALLVMILILPLVSAS
369	cab50419_1	1	out	1	\|ali\|phd\|phdHtm\|	300	4	3	4.00	193	MKASKLAVKLLKTENDEIIY
370	cab50453_1	1	out	1	\|ali\|phd\|phdHtm\|	251	9	5	12.00	24	MDVGTLILIAVVVLIGSIVS
371	cab50550_1	1	out	1	\|ali\|phd\|phdHtm\|	758	9	1	24.57	751	MNMRVPSVLLILLFLLLLNG
372	cab50668_1	1	out	1	\|ali\|phd\|phdHtm\|	370	9	3	16.00	28	MEWSTLTTIFDTSLAVVFTW

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